Stem-loop sequence mmu-mir-6996

Accession

MI0022844 (change log)

Symbol

MGI:Mir6996

Description

Mus musculus miR-6996 stem-loop

Stem-loop

   uggg     c  -   -    -   a   agca 
5'     cugca ag gac agag cac guc    u
       ||||| || ||| |||| ||| |||     
3'     gacgu uc cug ucuc gug cag    c
   ----     c  a   g    u   g   ccua 

Deep sequencing

427 reads, 138 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 26470059-26470119 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000030658 ; Notch1-003; intron 1

  OTTMUST00000030656 ; Notch1-001; intron 22

  ENSMUST00000129506 ; Notch1-003; intron 1

  ENSMUST00000028288 ; Notch1-001; intron 22

Database links

• MGI:Mir6996
• miRBase Tracker:MI0022844

Mature sequence mmu-miR-6996-5p

• Accession: MIMAT0027894
• Sequence: 6 - ugcacaggacagagcacaguc - 26
• Deep sequencing: 413 reads, 56 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6996-5p
  • miRDB:mmu-miR-6996-5p

Mature sequence mmu-miR-6996-3p

• Accession: MIMAT0027895
• Sequence: 39 - cggugucucuggucacucugcag - 61
• Deep sequencing: 14 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6996-3p
  • miRDB:mmu-miR-6996-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).