Stem-loop sequence mmu-mir-6995

Accession

MI0022843 (change log)

Symbol

MGI:Mir6995

Description

Mus musculus miR-6995 stem-loop

Stem-loop

   cagac   g   ua        -aa    ga a      
5'      cug gag  gaaggggg   acca  a ugagg 
        ||| |||  ||||||||   ||||  | |||| g
3'      gac cuc  cuuccccu   uggu  u auuuc 
   -----   a   uc        gug    ag a      

Deep sequencing

100 reads, 0 reads per million, 38 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 47273519-47273589 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000111800 ; Sh3pxd2a-202; intron 10

  ENSMUST00000081619 ; Sh3pxd2a-201; intron 11

Database links

• MGI:Mir6995
• miRBase Tracker:MI0022843

Mature sequence mmu-miR-6995-5p

• Accession: MIMAT0027892
• Sequence: 6 - cugggaguagaagggggaaacca - 28
• Deep sequencing: 64 reads, 26 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6995-5p
  • miRDB:mmu-miR-6995-5p

Mature sequence mmu-miR-6995-3p

• Accession: MIMAT0027893
• Sequence: 51 - uguguccccuuccucucacag - 71
• Deep sequencing: 19 reads, 14 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6995-3p
  • miRDB:mmu-miR-6995-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).