Stem-loop sequence mmu-mir-6992

Accession

MI0022840 (change log)

Symbol

MGI:Mir6992

Description

Mus musculus miR-6992 stem-loop

Stem-loop

   auau    cu     g   uggcug    -   uu       u      u  u  uaaca 
5'     cugc  gugau guu      agug gaa  gguugug uggagg ua gg     g
       ||||  ||||| |||      |||| |||  ||||||| |||||| || ||     c
3'     gacg  uacua uag      ucac cuu  ccaacac auuucc gu cc     c
   ----    uu     g   ------    u   --       c      c  -  uuucu 

Deep sequencing

31 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 8742971-8743079 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000103608 ; Stx5a-010; exon 1

  OTTMUST00000103614 ; Stx5a-015; intron 1

  OTTMUST00000103603 ; Stx5a-005; intron 2

  OTTMUST00000103605 ; Stx5a-007; intron 2

  OTTMUST00000103610 ; Stx5a-002; intron 2

  OTTMUST00000103612 ; Stx5a-003; intron 2

  OTTMUST00000103613 ; Stx5a-014; intron 2

  OTTMUST00000103560 ; Stx5a-001; intron 3

  OTTMUST00000103606 ; Stx5a-006; intron 3

  OTTMUST00000103607 ; Stx5a-004; intron 3

  OTTMUST00000103611 ; Stx5a-013; intron 3

  ENSMUST00000176093 ; Stx5a-010; exon 1

  ENSMUST00000176009 ; Stx5a-015; intron 1

  ENSMUST00000177322 ; Stx5a-005; intron 2

  ENSMUST00000177373 ; Stx5a-007; intron 2

  ENSMUST00000073430 ; Stx5a-002; intron 2

  ENSMUST00000176013 ; Stx5a-003; intron 2

  ENSMUST00000176260 ; Stx5a-014; intron 2

  ENSMUST00000176381 ; Stx5a-001; intron 3

  ENSMUST00000175872 ; Stx5a-006; intron 3

  ENSMUST00000010254 ; Stx5a-004; intron 3

  ENSMUST00000175901 ; Stx5a-013; intron 3

Database links

• MGI:Mir6992
• miRBase Tracker:MI0022840

Mature sequence mmu-miR-6992-5p

• Accession: MIMAT0027886
• Sequence: 6 - ugccugugaugguuuggcugagu - 28
• Deep sequencing: 25 reads, 15 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6992-5p
  • miRDB:mmu-miR-6992-5p

Mature sequence mmu-miR-6992-3p

• Accession: MIMAT0027887
• Sequence: 88 - ucucacugaugaucauuugcag - 109
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6992-3p
  • miRDB:mmu-miR-6992-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).