Stem-loop sequence mmu-mir-6990

Accession

MI0022838 (change log)

Symbol

MGI:Mir6990

Description

Mus musculus miR-6990 stem-loop

Stem-loop

   gcu    c    u   u         --------   g   ucu      c 
5'    ugcc aggg gag cagggcucu        ccu uca   gggccc c
      |||| |||| ||| |||||||||        ||| |||   |||||| u
3'    acgg uccu cuc gucccgagg        gga ggu   cucggg c
   --g    -    u   c         ucaccgcc   g   ---      c 

Deep sequencing

202 reads, 93.3 reads per million, 60 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 6914196-6914286 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000098347 ; Esrra-005; intron 1

  OTTMUST00000056137 ; Esrra-001; intron 2

  OTTMUST00000098348 ; Esrra-004; exon 2

  ENSMUST00000173635 ; Esrra-005; intron 1

  ENSMUST00000025906 ; Esrra-001; intron 2

  ENSMUST00000173308 ; Esrra-004; exon 2

Database links

• MGI:Mir6990
• miRBase Tracker:MI0022838

Mature sequence mmu-miR-6990-5p

• Accession: MIMAT0027882
• Sequence: 6 - cccagggugagucagggcucu - 26
• Deep sequencing: 166 reads, 51 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6990-5p
  • miRDB:mmu-miR-6990-5p

Mature sequence mmu-miR-6990-3p

• Accession: MIMAT0027883
• Sequence: 71 - agcccugccucuuccuggcag - 91
• Deep sequencing: 25 reads, 18 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6990-3p
  • miRDB:mmu-miR-6990-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).