Stem-loop sequence mmu-mir-6988

Accession

MI0022836 (change log)

Symbol

MGI:Mir6988

Description

Mus musculus miR-6988 stem-loop

Stem-loop

   au    g u     -  u    cc     ag 
5'   cugg g ggaga gc gagg  caggu  c
     |||| | ||||| || ||||  |||||   
3'   gacc u ccucu ug cucc  guccg  u
   --    g -     a  u    -a     ac 

Deep sequencing

404 reads, 1.37 reads per million, 73 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 6051334-6051392 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000082237 ; Syvn1-003; intron 8

  OTTMUST00000082238 ; Syvn1-004; intron 11

  OTTMUST00000082235 ; Syvn1-001; intron 13

  OTTMUST00000082239 ; Syvn1-005; intron 13

  OTTMUST00000082236 ; Syvn1-002; intron 13

  ENSMUST00000142101 ; Syvn1-003; intron 8

  ENSMUST00000025723 ; Syvn1-004; intron 11

  ENSMUST00000138532 ; Syvn1-001; intron 13

  ENSMUST00000156550 ; Syvn1-005; intron 13

  ENSMUST00000134667 ; Syvn1-002; intron 13

Database links

• MGI:Mir6988
• miRBase Tracker:MI0022836

Mature sequence mmu-miR-6988-5p

• Accession: MIMAT0027878
• Sequence: 5 - gggguggagagcugaggccca - 25
• Deep sequencing: 27 reads, 14 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6988-5p
  • miRDB:mmu-miR-6988-5p

Mature sequence mmu-miR-6988-3p

• Accession: MIMAT0027879
• Sequence: 38 - ugaccucuguaucuccugccag - 59
• Deep sequencing: 370 reads, 68 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6988-3p
  • miRDB:mmu-miR-6988-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).