Stem-loop sequence mmu-mir-6987

Accession

MI0022835 (change log)

Symbol

MGI:Mir6987

Description

Mus musculus miR-6987 stem-loop

Stem-loop

   aacag     -     u  -ca      ga    uaga 
5'      uggga caggg ga   ggguga  ccca    u
        ||||| ||||| ||   ||||||  ||||    c
3'      accuu guccc cu   cccacu  gggu    a
   ----g     c     u  uua      uc    cgag 

Deep sequencing

137 reads, 15.6 reads per million, 45 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 5679004-5679076 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000083272 ; Pcnxl3-010; intron 2

  OTTMUST00000083270 ; Pcnxl3-008; intron 6

  OTTMUST00000083267 ; Pcnxl3-005; intron 9

  OTTMUST00000083266 ; Pcnxl3-004; intron 13

  OTTMUST00000083263 ; Pcnxl3-001; intron 15

  ENSMUST00000137313 ; Pcnxl3-010; intron 2

  ENSMUST00000127876 ; Pcnxl3-008; intron 6

  ENSMUST00000145270 ; Pcnxl3-005; intron 9

  ENSMUST00000068169 ; Pcnxl3-004; intron 13

  ENSMUST00000113615 ; Pcnxl3-001; intron 15

Database links

• MGI:Mir6987
• miRBase Tracker:MI0022835

Mature sequence mmu-miR-6987-5p

• Accession: MIMAT0027876
• Sequence: 6 - ugggacagggugacagggugag - 27
• Deep sequencing: 118 reads, 41 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6987-5p
  • miRDB:mmu-miR-6987-5p

Mature sequence mmu-miR-6987-3p

• Accession: MIMAT0027877
• Sequence: 51 - cacccauuucucccugcuuccag - 73
• Deep sequencing: 17 reads, 13 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6987-3p
  • miRDB:mmu-miR-6987-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).