Stem-loop sequence mmu-mir-6981

Accession

MI0022829 (change log)

Symbol

MGI:Mir6981

Description

Mus musculus miR-6981 stem-loop

Stem-loop

   g        agga  -      aa   ----- g     cu    cuu      uucagcc 
5'  ugaggaga    ag aggcug  ggc     u ggcuu  ggug   cugggg       a
    ||||||||    || ||||||  |||     | |||||  ||||   ||||||       c
3'  acuccucu    uc uccgac  ccg     a ccgga  ccac   gacccc       a
   g        ---g  a      aa   ugacc g     -c    cgu      cacccac 

Deep sequencing

198 reads, 0 reads per million, 41 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr18: 37974503-37974617 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000042944 ; Arap3-201; intron 30

Database links

• MGI:Mir6981
• miRBase Tracker:MI0022829

Mature sequence mmu-miR-6981-5p

• Accession: MIMAT0027864
• Sequence: 1 - gugaggagaaggaagaggcugaaggc - 26
• Deep sequencing: 171 reads, 37 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6981-5p
  • miRDB:mmu-miR-6981-5p

Mature sequence mmu-miR-6981-3p

• Accession: MIMAT0027865
• Sequence: 94 - caacagccuacugucuccucag - 115
• Deep sequencing: 8 reads, 6 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6981-3p
  • miRDB:mmu-miR-6981-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).