Stem-loop sequence mmu-mir-6979

Accession

MI0022827 (change log)

Symbol

MGI:Mir6979

Description

Mus musculus miR-6979 stem-loop

Stem-loop

   -g     g --     g  u    -   u 
5'   gggag c  gcaga ac gagc ugc c
     ||||| |  ||||| || |||| ||| a
3'   cccuc g  ugucu ug uucg gcg g
   ga     g uc     g  -    c   u 

Deep sequencing

70 reads, 0 reads per million, 33 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr18: 37854605-37854660 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000049918 ; Diap1-001; intron 22

  OTTMUST00000049938 ; Diap1-002; intron 23

  OTTMUST00000049939 ; Diap1-003; intron 24

  ENSMUST00000080033 ; Diap1-201; intron 21

  ENSMUST00000115629 ; Diap1-202; intron 21

  ENSMUST00000115634 ; Diap1-001; intron 22

  ENSMUST00000025337 ; Diap1-002; intron 23

  ENSMUST00000115631 ; Diap1-003; intron 24

Database links

• MGI:Mir6979
• miRBase Tracker:MI0022827

Mature sequence mmu-miR-6979-5p

• Accession: MIMAT0027860
• Sequence: 1 - ggggaggcgcagagacugag - 20
• Deep sequencing: 5 reads, 4 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6979-5p
  • miRDB:mmu-miR-6979-5p

Mature sequence mmu-miR-6979-3p

• Accession: MIMAT0027861
• Sequence: 36 - uugugucugucuggcucccag - 56
• Deep sequencing: 59 reads, 30 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6979-3p
  • miRDB:mmu-miR-6979-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).