Stem-loop sequence mmu-mir-6978

Accession

MI0022826 (change log)

Symbol

MGI:Mir6978

Description

Mus musculus miR-6978 stem-loop

Stem-loop

   aaaggaa          a       gugc 
5'        ggggugagag gaagcug    c
          |||||||||| |||||||     
3'        ucccacucuc cuucggc    a
   ---gacg          a       accu 

Deep sequencing

209 reads, 0 reads per million, 27 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 57217172-57217228 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000110721 ; C3-002; intron 2

  OTTMUST00000110723 ; C3-004; intron 3

  OTTMUST00000110722 ; C3-003; intron 4

  OTTMUST00000110561 ; C3-001; intron 22

  ENSMUST00000177046 ; C3-002; intron 2

  ENSMUST00000177425 ; C3-004; intron 3

  ENSMUST00000176457 ; C3-003; intron 4

  ENSMUST00000024988 ; C3-001; intron 22

Database links

• MGI:Mir6978
• miRBase Tracker:MI0022826

Mature sequence mmu-miR-6978-5p

• Accession: MIMAT0027858
• Sequence: 6 - aaggggugagagagaagcuggug - 28
• Deep sequencing: 36 reads, 22 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6978-5p
  • miRDB:mmu-miR-6978-5p

Mature sequence mmu-miR-6978-3p

• Accession: MIMAT0027859
• Sequence: 35 - acggcuucacucucacccugcag - 57
• Deep sequencing: 173 reads, 20 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6978-3p
  • miRDB:mmu-miR-6978-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).