Stem-loop sequence mmu-mir-6973a

Accession

MI0022821 (change log)

Symbol

MGI:Mir6973a

Description

Mus musculus miR-6973a stem-loop

Stem-loop

   ggcucuac      -    g      u   auu  -c  a 
5'         gguggg aggg uggagu gcc   ag  ca a
           |||||| |||| |||||| |||   ||  ||  
3'         ccaucc uccc aucuca cgg   uc  gu u
   -gaccuac      a    a      -   guc  ca  c 

Deep sequencing

222 reads, 0 reads per million, 31 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 35194972-35195049 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000095885 ; Ltb-001; intron 1

  OTTMUST00000095886 ; Ltb-002; intron 1

  OTTMUST00000095887 ; Ltb-003; intron 1

  ENSMUST00000025262 ; Ltb-001; intron 1

  ENSMUST00000173510 ; Ltb-002; intron 1

  ENSMUST00000173600 ; Ltb-003; intron 1

Clustered miRNAs

< 10kb from mmu-mir-6973a

• mmu-mir-6973a: chr17: 35194972-35195049 [+]
• mmu-mir-6974: chr17: 35204475-35204557 [-]

Database links

• MGI:Mir6973a
• miRBase Tracker:MI0022821

Mature sequence mmu-miR-6973a-5p

• Accession: MIMAT0027848
• Sequence: 6 - uacggugggagggguggaguug - 27
• Deep sequencing: 138 reads, 25 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6973a-5p
  • miRDB:mmu-miR-6973a-5p

Mature sequence mmu-miR-6973a-3p

• Accession: MIMAT0027849
• Sequence: 53 - cacucuaacccuaccuacccau - 74
• Deep sequencing: 80 reads, 22 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6973a-3p
  • miRDB:mmu-miR-6973a-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).