Stem-loop sequence mmu-mir-3547

Accession

MI0022813 (change log)

Symbol

MGI:Mir3547

Description

Mus musculus miR-3547 stem-loop

Gene family

MIPF0001788; mir-3547

Stem-loop

   g     a         g  c      uguacccau  g      au 
5'  uggga gaggggugg gc cgggac         gu aggacu  u
    ||||| ||||||||| || ||||||         || ||||||  c
3'  acucu cuccccacc cg gucuug         cg uccuga  u
   g     -         a  a      -----uucu  -      gu 

Deep sequencing

727 reads, 20.5 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 25245551-25245638 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000114477 ; Baiap3-010; intron 1

  OTTMUST00000114473 ; Baiap3-004; intron 24

  OTTMUST00000093378 ; Baiap3-001; intron 25

  OTTMUST00000114475 ; Baiap3-005; intron 25

  OTTMUST00000114476 ; Baiap3-006; intron 25

  ENSMUST00000182922 ; Baiap3-010; intron 1

  ENSMUST00000182825 ; Baiap3-004; intron 24

  ENSMUST00000182056 ; Baiap3-001; intron 25

  ENSMUST00000182435 ; Baiap3-005; intron 25

  ENSMUST00000169109 ; Baiap3-006; intron 25

Database links

• MGI:Mir3547
• miRBase Tracker:MI0022813

Mature sequence mmu-miR-3547-5p

• Accession: MIMAT0027832
• Sequence: 1 - gugggaagagggguggggcccggga - 25
• Deep sequencing: 11 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3547-5p
  • miRDB:mmu-miR-3547-5p

Mature sequence mmu-miR-3547-3p

• Accession: MIMAT0027833
• Sequence: 68 - ugagcaccaccccucucucag - 88
• Deep sequencing: 713 reads, 33 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3547-3p
  • miRDB:mmu-miR-3547-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).