Stem-loop sequence mmu-mir-6948

Accession

MI0022795 (change log)

Symbol

MGI:Mir6948

Description

Mus musculus miR-6948 stem-loop

Stem-loop

   ggauca u          cu u    cacuuc 
5'       g ucagacagga  g gaca      u
         | ||||||||||  | ||||       
3'       c agucuguccu  c cugu      c
   --gaca c          -u -    cuccgu 

Deep sequencing

270 reads, 142 reads per million, 60 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr14: 54643049-54643110 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000082687 ; Acin1-022; intron 2

  OTTMUST00000082675 ; Acin1-010; intron 11

  OTTMUST00000082669 ; Acin1-004; intron 11

  OTTMUST00000082674 ; Acin1-009; intron 11

  OTTMUST00000082673 ; Acin1-008; intron 12

  OTTMUST00000082671 ; Acin1-006; intron 12

  OTTMUST00000082668 ; Acin1-003; intron 17

  OTTMUST00000082640 ; Acin1-001; intron 18

  OTTMUST00000082667 ; Acin1-002; intron 18

  ENSMUST00000152773 ; Acin1-022; intron 2

  ENSMUST00000126166 ; Acin1-010; intron 11

  ENSMUST00000141453 ; Acin1-004; intron 11

  ENSMUST00000167015 ; Acin1-009; intron 11

  ENSMUST00000022794 ; Acin1-008; intron 12

  ENSMUST00000150371 ; Acin1-006; intron 12

  ENSMUST00000148754 ; Acin1-201; intron 12

  ENSMUST00000111484 ; Acin1-003; intron 17

  ENSMUST00000022793 ; Acin1-001; intron 18

  ENSMUST00000147714 ; Acin1-002; intron 18

  antisense

  ENSMUST00000169818 ; Gm17606-201; intron 1

Database links

• MGI:Mir6948
• miRBase Tracker:MI0022795

Mature sequence mmu-miR-6948-5p

• Accession: MIMAT0027796
• Sequence: 6 - aguucagacaggacugugacac - 27
• Deep sequencing: 107 reads, 37 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6948-5p
  • miRDB:mmu-miR-6948-5p

Mature sequence mmu-miR-6948-3p

• Accession: MIMAT0027797
• Sequence: 41 - uguccuuccugucugaccaca - 61
• Deep sequencing: 140 reads, 21 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6948-3p
  • miRDB:mmu-miR-6948-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).