Stem-loop sequence mmu-mir-6899

Accession

MI0022746 (change log)

Symbol

MGI:Mir6899

Description

Mus musculus miR-6899 stem-loop

Stem-loop

   cag    c   a     -c     ---- g   u 
5'    gcag aga cgcag  gggca    u aga c
      |||| ||| |||||  |||||    | ||| c
3'    cguc ucu guguc  ccugu    a ucu u
   -ga    u   -     uu     uacc g   u 

Deep sequencing

217 reads, 6.98 reads per million, 43 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 64042438-64042501 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000033149 ; Klf7-001; intron 2

  ENSMUST00000114086 ; Klf7-001; intron 2

  ENSMUST00000055001 ; Klf7-201; intron 2

Database links

• MGI:Mir6899
• miRBase Tracker:MI0022746

Mature sequence mmu-miR-6899-5p

• Accession: MIMAT0027698
• Sequence: 6 - agcagaacgcagcgggcauga - 26
• Deep sequencing: 19 reads, 16 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6899-5p
  • miRDB:mmu-miR-6899-5p

Mature sequence mmu-miR-6899-3p

• Accession: MIMAT0027699
• Sequence: 42 - uuguccuucugugucuucugcag - 64
• Deep sequencing: 197 reads, 32 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6899-3p
  • miRDB:mmu-miR-6899-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).