Stem-loop sequence hsa-mir-6887

Accession

MI0022734 (change log)

Symbol

HGNC:MIR6887

Description

Homo sapiens miR-6887 stem-loop

Literature search

1 open access papers mention hsa-mir-6887
(1 sentences)

Stem-loop

   gagaa        c  a     a    -a   gc 
5'      ugggggga ag uggag ggac  cag  u
        |||||||| || ||||| ||||  |||  g
3'      auccuccu uc accuc ccug  guc  g
   ----g        u  -     c    ga   ac 

Deep sequencing

68 reads, 0 reads per million, 29 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 35122700-35122764 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000461457 ; SCGB2B2-001; intron 1

  OTTHUMT00000464364 ; SCGB2B2-002; intron 2

  ENST00000601241 ; SCGB2B2-001; intron 1

  ENST00000595326 ; SCGB2B2-002; intron 2

Database links

• HGNC:MIR6887
• miRBase Tracker:MI0022734

Mature sequence hsa-miR-6887-5p

• Accession: MIMAT0027674
• Sequence: 6 - uggggggacagauggagaggaca - 28
• Deep sequencing: 44 reads, 23 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6887-5p
  • miRDB:hsa-miR-6887-5p

Mature sequence hsa-miR-6887-3p

• Accession: MIMAT0027675
• Sequence: 45 - uccccuccacuuuccuccuag - 65
• Deep sequencing: 19 reads, 12 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6887-3p
  • miRDB:hsa-miR-6887-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).