Stem-loop sequence hsa-mir-6870

Accession

MI0022717 (change log)

Symbol

HGNC:MIR6870

Description

Homo sapiens miR-6870 stem-loop

Stem-loop

   caaggu               u  a uucau 
5'       gggggagaugggggu ga c     u
         ||||||||||||||| || |      
3'       uuuccucuaccccua cu g     u
   ---gac               -  c uacuc 

Deep sequencing

57 reads, 2.7 reads per million, 37 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr20: 10649636-10649695 [-]
• Overlapping transcripts:

  sense

  ENST00000254958 ; JAG1-201; intron 2

Database links

• HGNC:MIR6870
• miRBase Tracker:MI0022717

Mature sequence hsa-miR-6870-5p

• Accession: MIMAT0027640
• Sequence: 6 - ugggggagauggggguuga - 24
• Deep sequencing: 21 reads, 15 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6870-5p
  • miRDB:hsa-miR-6870-5p

Mature sequence hsa-miR-6870-3p

• Accession: MIMAT0027641
• Sequence: 39 - gcucauccccaucuccuuucag - 60
• Deep sequencing: 15 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6870-3p
  • miRDB:hsa-miR-6870-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).