Stem-loop sequence hsa-mir-6839

Accession

MI0022685 (change log)

Symbol

HGNC:MIR6839

Description

Homo sapiens miR-6839 stem-loop

Stem-loop

   uguagu              c                        ---------      gcu 
5'       cuggauugaagaga gacccaagcaggcuuugugugagc         agugag   a
         |||||||||||||| ||||||||||||||||||||||||         ||||||    
3'       gaccuaacuucucu uuggguucguccgaagcacacucg         ucacuu   u
   ------              u                        agcgugggu      auu 

Deep sequencing

277 reads, 0 reads per million, 58 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 64679064-64679176 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000460821 ; INTS4L1-002; intron 11

  ENST00000587624 ; INTS4L1-002; intron 11

  ENST00000297235 ; INTS4L1-201; intron 12

Database links

• HGNC:MIR6839
• miRBase Tracker:MI0022685

Mature sequence hsa-miR-6839-5p

• Accession: MIMAT0027580
• Sequence: 6 - ucuggauugaagagacgaccca - 27
• Deep sequencing: 239 reads, 45 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6839-5p
  • miRDB:hsa-miR-6839-5p

Mature sequence hsa-miR-6839-3p

• Accession: MIMAT0027581
• Sequence: 92 - uuggguuuucucuucaauccag - 113
• Deep sequencing: 17 reads, 11 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6839-3p
  • miRDB:hsa-miR-6839-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).