Stem-loop sequence hsa-mir-6772

Accession

MI0022617 (change log)

Symbol

HGNC:MIR6772

Description

Homo sapiens miR-6772 stem-loop

Stem-loop

   aggcc    ug   - - u     u    ac  a 
5'      uggg  uag g c ggagc gagg  ug g
        ||||  ||| | | ||||| ||||  || g
3'      accc  guc c g ccucg uucc  ac c
   --gac    gu   u a u     -    --  u 

Deep sequencing

43 reads, 0 reads per million, 33 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 57772289-57772352 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000433302 ; KATNB1-005; intron 1

  OTTHUMT00000433303 ; KATNB1-006; intron 1

  OTTHUMT00000257343 ; KATNB1-001; intron 2

  OTTHUMT00000433301 ; KATNB1-010; intron 2

  OTTHUMT00000433298 ; KATNB1-002; intron 2

  OTTHUMT00000433300 ; KATNB1-004; intron 2

  OTTHUMT00000433299 ; KATNB1-003; intron 3

  ENST00000569627 ; KATNB1-005; intron 1

  ENST00000563127 ; KATNB1-006; intron 1

  ENST00000379661 ; KATNB1-001; intron 2

  ENST00000566726 ; KATNB1-010; intron 2

  ENST00000566611 ; KATNB1-002; intron 2

  ENST00000566785 ; KATNB1-004; intron 2

  ENST00000562592 ; KATNB1-003; intron 3

Database links

• HGNC:MIR6772
• miRBase Tracker:MI0022617

Mature sequence hsa-miR-6772-5p

• Accession: MIMAT0027444
• Sequence: 6 - uggguguaggcuggagcugagg - 27
• Deep sequencing: 10 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6772-5p
  • miRDB:hsa-miR-6772-5p

Mature sequence hsa-miR-6772-3p

• Accession: MIMAT0027445
• Sequence: 41 - uugcuccugacucugugcccaca - 63
• Deep sequencing: 20 reads, 16 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6772-3p
  • miRDB:hsa-miR-6772-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).