Stem-loop sequence mmu-mir-6537

Accession

MI0022353 (change log)

Symbol

MGI:Mir6537

Description

Mus musculus miR-6537 stem-loop

Stem-loop

   ug  cg uuc  cuu     a a   uccu   gg      uc   ca         a 
5'   uc  c   gc   agaga g guu    agc  ugaguu  ucc  cuggugacc g
     ||  |   ||   ||||| | |||    |||  ||||||  |||  ||||||||| g
3'   ag  g   cg   ucucu c caa    ucg  acucaa  agg  gacuauugg a
   --  au -uc  ---     c -   ccac   --      ga   ug         a 

Deep sequencing

1593 reads, 4.65 reads per million, 43 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 25097066-25097175 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000048575 ; Pou2f2-008; exon 9

  OTTMUST00000048570 ; Pou2f2-003; exon 10

  OTTMUST00000048571 ; Pou2f2-004; exon 10

  OTTMUST00000103596 ; Pou2f2-011; exon 10

  OTTMUST00000048528 ; Pou2f2-001; exon 10

  OTTMUST00000048569 ; Pou2f2-002; exon 10

  OTTMUST00000048572 ; Pou2f2-005; exon 10

  OTTMUST00000048574 ; Pou2f2-007; exon 10

  OTTMUST00000103597 ; Pou2f2-010; exon 10

  ENSMUST00000108416 ; Pou2f2-008; exon 9

  ENSMUST00000098679 ; Pou2f2-003; exon 10

  ENSMUST00000108418 ; Pou2f2-004; exon 10

  ENSMUST00000108415 ; Pou2f2-011; exon 10

  ENSMUST00000175774 ; Pou2f2-001; exon 10

  ENSMUST00000108417 ; Pou2f2-002; exon 10

  ENSMUST00000108414 ; Pou2f2-005; exon 10

  ENSMUST00000108413 ; Pou2f2-007; exon 10

  ENSMUST00000176408 ; Pou2f2-010; exon 10

Database links

• MGI:Mir6537
• miRBase Tracker:MI0022353

Mature sequence mmu-miR-6537-5p

• Accession: MIMAT0025581
• Sequence: 35 - gugaguuucucccacuggugac - 56
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6537-5p
  • miRDB:mmu-miR-6537-5p

Mature sequence mmu-miR-6537-3p

• Accession: MIMAT0025582
• Sequence: 65 - uuaucagguggaagaacucagcu - 87
• Deep sequencing: 1589 reads, 43 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6537-3p
  • miRDB:mmu-miR-6537-3p

References

1. PMID:20605486 "Regulation of microRNA expression and abundance during lymphopoiesis" Kuchen S, Resch W, Yamane A, Kuo N, Li Z, Chakraborty T, Wei L, Laurence A, Yasuda T, Peng S, Hu-Li J, Lu K, Dubois W, Kitamura Y, Charles N, Sun HW, Muljo S, Schwartzberg PL, Paul WE, O'Shea J, Rajewsky K, Casellas R Immunity. 32:828-839(2010).