Stem-loop sequence mmu-mir-378d

Accession

MI0021951 (change log)

Symbol

MGI:Mir378d

Description

Mus musculus miR-378d stem-loop

Literature search

72 open access papers mention mmu-mir-378d
(721 sentences)

Stem-loop

   a a    ----    uagc      -   --g      ga   uu   gauuu       g 
5'  g ugcu    ggga    acuggc cuu   gaguca  agg  ugu     gguggca c
    | ||||    ||||    |||||| |||   ||||||  |||  |||     |||||||  
3'  c acga    cccu    ugacug ggg   uuuagu  ucc  aua     cuaccgu u
   g c    auuu    ---u      u   auu      -g   cu   ---ac       c 

Deep sequencing

10948878 reads, 1.02e+04 reads per million, 107 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 126710282-126710391 [-]
• Overlapping transcripts:

  intergenic

Database links

• MGI:Mir378d
• miRBase Tracker:MI0021951

Mature sequence mmu-miR-378d

• Accession: MIMAT0025167
• Sequence: 16 - acuggccuuggagucagaaggu - 37
• Deep sequencing: 10948873 reads, 107 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-378d
  • miRDB:mmu-miR-378d

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).