Stem-loop sequence mmu-mir-378c

Accession

MI0021923 (change log)

Symbol

MGI:Mir378c

Description

Mus musculus miR-378c stem-loop

Literature search

73 open access papers mention mmu-mir-378c
(704 sentences)

Stem-loop

   uaua ug  c ug  guc   -a  --c          g -   g      cc 
5'     c  ga u  ga   aga  gc   uuggguuuga g acu ggcuag  u
       |  || |  ||   |||  ||   |||||||||| | ||| ||||||  c
3'     g  cu a  cu   ucu  ug   aacccaaauu u ugg uugauu  u
   ---a gu  - gu  --a   ga  uac          g g   g      ac 

Deep sequencing

12226660 reads, 1.08e+04 reads per million, 107 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr14: 46954830-46954928 [-]
• Overlapping transcripts:

  antisense

  OTTMUST00000057925 ; Samd4-002; intron 1

  OTTMUST00000057924 ; Samd4-001; intron 2

  ENSMUST00000137543 ; Samd4-002; intron 1

  ENSMUST00000022386 ; Samd4-001; intron 2

  ENSMUST00000100672 ; Samd4-201; intron 2

Database links

• MGI:Mir378c
• RNAcentral:URS000075C8E7_10090
• miRBase Tracker:MI0021923

Mature sequence mmu-miR-378c

• Accession: MIMAT0025138
• Sequence: 4 - acuggacuuggagucagaagc - 24
• Deep sequencing: 12226653 reads, 107 experiments
• Evidence: experimental; SOLiD [1]
• Database links:
  • RNAcentral:URS000075AB33_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-378c
  • miRDB:mmu-miR-378c

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).