Stem-loop sequence mmu-mir-6340

AccessionMI0021868 (change log)
Symbol MGI:Mir6340
DescriptionMus musculus miR-6340 stem-loop
Literature search

1 open access papers mention mmu-mir-6340
(2 sentences)

Stem-loop 
   c    -   u -aag     g   u g   -gu a    ca      cuuu        ugg 
5'  uucu ucc c    gucag ccc g guc   c gcag  gcuucg    ggcuccga   c
    |||| ||| |    ||||| ||| | |||   | ||||  ||||||    ||||||||   u
3'  aagg agg g    cgguu ggg c cag   g cguu  cgaagu    uugaggcu   g
   u    u   u acua     -   u g   acc c    cc      ----        ucu
Get sequence
Deep sequencing
9 reads, 28.6 reads per million, 7 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr2: 173701030-173701148 [-]
antisense
OTTMUST00000039407 ; Rab22a-002; exon 6
OTTMUST00000039408 ; Rab22a-003; exon 6
OTTMUST00000039406 ; Rab22a-001; exon 7
ENSMUST00000142820 ; Rab22a-002; exon 6
ENSMUST00000109110 ; Rab22a-003; exon 6
ENSMUST00000029024 ; Rab22a-001; exon 7
Database links

Mature sequence mmu-miR-6340

Accession MIMAT0025083
Sequence

29 -  

gucagcagcagcuucgcuuuggc

 - 51

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).