Stem-loop sequence hsa-mir-5688

Accession

MI0019292 (change log)

Symbol

HGNC:MIR5688

Description

Homo sapiens miR-5688 stem-loop

Stem-loop

               cu         a    a         gg 
5' gaaacacuuugc  uuuuacagg guuu uuauguuuu  a
   ||||||||||||  ||||||||| |||| |||||||||  c
3' cuuugugaaacg  aaaaugucc caaa aauacaaag  a
               ac         a    c         au 

Deep sequencing

40 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 85385710-85385792 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000352818 ; CADM2-002; intron 1

  OTTHUMT00000352822 ; CADM2-006; intron 1

  ENST00000383699 ; CADM2-002; intron 1

  ENST00000407528 ; CADM2-006; intron 1

Database links

• HGNC:MIR5688
• miRBase Tracker:MI0019292

Mature sequence hsa-miR-5688

• Accession: MIMAT0022479
• Sequence: 52 - uaacaaacaccuguaaaacagc - 73
• Deep sequencing: 37 reads, 15 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-5688
  • TargetScanVert:hsa-miR-5688
  • miRDB:hsa-miR-5688

References

1. PMID:21980368 "MicroRNAs associated with metastatic prostate cancer" Watahiki A, Wang Y, Morris J, Dennis K, O'Dwyer HM, Gleave M, Gout PW, Wang Y PLoS One. 6:e24950(2011).