Stem-loop sequence mmu-mir-5620

Accession

MI0019188 (change log)

Symbol

MGI:Mir5620

Description

Mus musculus miR-5620 stem-loop

Literature search

1 open access papers mention mmu-mir-5620
(3 sentences)

Stem-loop

   ac          cuu         caa 
5'   gaggcagggg   ugacuguga   a
     ||||||||||   |||||||||   a
3'   cuccgucccc   acugacacu   u
   ca          -cu         cac 

Deep sequencing

462 reads, 4.17 reads per million, 72 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 7298891-7298946 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000097558 ; Clcn4-2-001; intron 1

  ENSMUST00000000619 ; Clcn4-2-001; intron 1

Database links

• MGI:Mir5620
• RNAcentral:URS000075F007_10090
• miRBase Tracker:MI0019188

Mature sequence mmu-miR-5620-5p

• Accession: MIMAT0022367
• Sequence: 1 - acgaggcaggggcuuugacugug - 23
• Deep sequencing: 401 reads, 63 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000002D9C5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5620-5p
  • miRDB:mmu-miR-5620-5p

Mature sequence mmu-miR-5620-3p

• Accession: MIMAT0022368
• Sequence: 36 - acagucaucccccugccucac - 56
• Deep sequencing: 51 reads, 25 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:mmu-miR-5620-3p
  • miRDB:mmu-miR-5620-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).