Stem-loop sequence hsa-mir-5009

Accession

MI0017877 (change log)

Symbol

HGNC:MIR5009

Description

Homo sapiens miR-5009 stem-loop

Stem-loop

   gaccagaagu    ug a          uu           g   uuugc 
5'           guuu  g uuuuggacuu  ucagauuuggg aua     a
             ||||  | ||||||||||  ||||||||||| |||     u
3'           uaaa  c aaaaccugaa  agucuaaaucc uau     u
   gaauaaccag    gu c          --           -   ucaua 

Deep sequencing

262 reads, 0 reads per million, 76 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 89883931-89884030 [-]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR5009
• RNAcentral:URS000075C16B_9606
• miRBase Tracker:MI0017877

Mature sequence hsa-miR-5009-5p

• Accession: MIMAT0021041
• Sequence: 21 - uuggacuuuuucagauuuggggau - 44
• Deep sequencing: 210 reads, 67 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000482389_9606
• Predicted targets:
  • TargetMiner:hsa-miR-5009-5p
  • TargetScanVert:hsa-miR-5009-5p
  • miRDB:hsa-miR-5009-5p

Mature sequence hsa-miR-5009-3p

• Accession: MIMAT0021042
• Sequence: 61 - uccuaaaucugaaaguccaaaa - 82
• Deep sequencing: 13 reads, 13 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-5009-3p
  • TargetScanVert:hsa-miR-5009-3p
  • miRDB:hsa-miR-5009-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).