Stem-loop sequence hsa-mir-5004

Accession

MI0017870 (change log)

Symbol

HGNC:MIR5004

Description

Homo sapiens miR-5004 stem-loop

Stem-loop

   -ggcacuugcuu       ag     -a     c       c a a ug g  gu 
5'             ggggguu  ugagg  caggg aaauuca g g u  g uu  g
               |||||||  |||||  ||||| ||||||| | | |  | ||   
3'             ccuucag  acucc  guccu uuuaggu c c a  c ga  c
   gguacagacuuu       -g     gg     -       u a - gu g  ga 

Deep sequencing

124 reads, 7.02 reads per million, 57 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 33438331-33438437 [+]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR5004
• RNAcentral:URS000075DBA5_9606
• miRBase Tracker:MI0017870

Mature sequence hsa-miR-5004-5p

• Accession: MIMAT0021027
• Sequence: 21 - ugaggacagggcaaauucacga - 42
• Deep sequencing: 28 reads, 18 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000054A671_9606
• Predicted targets:
  • TargetMiner:hsa-miR-5004-5p
  • TargetScanVert:hsa-miR-5004-5p
  • miRDB:hsa-miR-5004-5p

Mature sequence hsa-miR-5004-3p

• Accession: MIMAT0021028
• Sequence: 67 - cuuggauuuuccugggccucag - 88
• Deep sequencing: 32 reads, 19 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-5004-3p
  • TargetScanVert:hsa-miR-5004-3p
  • miRDB:hsa-miR-5004-3p

References

1. PMID:21558790 "Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis" Hansen TB, Kjems J, Bramsen JB RNA Biol. 8:378-383(2011).