Stem-loop sequence mmu-mir-5123

Accession

MI0018034 (change log)

Symbol

MGI:Mir5123

Description

Mus musculus miR-5123 stem-loop

Literature search

2 open access papers mention mmu-mir-5123
(2 sentences)

Stem-loop

   c                a    c                ag 
5'  auaugccauggugugu gauc auaugccauggugugu  a
    |||||||||||||||| |||| ||||||||||||||||   
3'  ugugugguaccguaua cuag ugugugguaccguaua  c
   -                c    a                cc 

Deep sequencing

477 reads, 7.14 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 40850056-40850138 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000015075 ; B4galt1-001; intron 1

  OTTMUST00000015076 ; B4galt1-002; intron 1

  ENSMUST00000030121 ; B4galt1-001; intron 1

  ENSMUST00000108096 ; B4galt1-002; intron 1

Database links

• EntrezGene:Mir5123
• MGI:Mir5123
• RNAcentral:URS000075DB38_10090
• miRBase Tracker:MI0018034

Mature sequence mmu-miR-5123

• Accession: MIMAT0020633
• Sequence: 59 - uguagauccauaugccauggugug - 82
• Deep sequencing: 165 reads, 46 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000015B140_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-5123
  • miRDB:mmu-miR-5123

References

1. PMID:21403133 "Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage" Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S Blood. 117:5340-5349(2011).