Stem-loop sequence hsa-mir-548ac

Accession

MI0016762 (change log)

Symbol

HGNC:MIR548AC

Description

Homo sapiens miR-548ac stem-loop

Gene family

MIPF0000317; mir-548

Literature search

56 open access papers mention hsa-mir-548ac
(170 sentences)

Stem-loop

   g                    u     -             uu 
5'  uauuagguuggugcaaaagu auugu gguuuuugcuauu  u
    |||||||||||||||||||| ||||| |||||||||||||  u
3'  augauccaaucacguuuuca uaacg ccaaaaacgguaa  u
   g                    u     g             uu 

Deep sequencing

5679 reads, 6.58 reads per million, 152 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 116560024-116560111 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000033480 ; RP11-159M11.2-001; intron 1

  ENST00000453128 ; RP11-159M11.2-001; intron 1

  antisense

  OTTHUMT00000033220 ; SLC22A15-001; intron 2

  OTTHUMT00000097502 ; SLC22A15-003; intron 2

  ENST00000369503 ; SLC22A15-001; intron 2

  ENST00000369502 ; SLC22A15-003; intron 2

Database links

• EntrezGene:MIR548AC
• HGNC:MIR548AC
• RNAcentral:URS000075BB42_9606
• miRBase Tracker:MI0016762

Mature sequence hsa-miR-548ac

• Accession: MIMAT0018938
• Sequence: 53 - caaaaaccggcaauuacuuuug - 74
• Deep sequencing: 500 reads, 66 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002CE0C6_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548ac
  • TargetScanVert:hsa-miR-548ac
  • miRDB:hsa-miR-548ac

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).