Stem-loop sequence rno-mir-3587

Accession

MI0015463 (change log)

Description

Rattus norvegicus miR-3587 stem-loop

Stem-loop

   u   g   u  g  -gc     ---      cc 
5'  ugu ugg cg ca   gaagu   uguucu  a
    ||| ||| || ||   |||||   ||||||   
3'  aca auc gu gu   cuuua   acaaga  c
   a   g   -  g  aaa     guc      ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 58344283-58344345 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053586 ; Mir29b1-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-3587

• rno-mir-3556a: chr4: 58343919-58344036 [+]
• rno-mir-29a: chr4: 58343931-58344018 [-]
• rno-mir-3587: chr4: 58344283-58344345 [+]
• rno-mir-29b-1: chr4: 58344310-58344390 [-]

Database links

• EntrezGene:Mir3587
• miRBase Tracker:MI0015463

Mature sequence rno-miR-3587

• Accession: MIMAT0017883
• Sequence: 36 - aacacugauuucaaauggugc - 56
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3587
  • miRDB:rno-miR-3587

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).