Stem-loop sequence rno-mir-133c

Accession

MI0015456 (change log)

Description

Rattus norvegicus miR-133c stem-loop

Gene family

MIPF0000029; mir-133

Literature search

61 open access papers mention rno-mir-133c
(223 sentences)

Stem-loop

   -  ug  uguccu      auca    aua    c       u   g           - auu 
5'  gc  gc      guggca    augc   gcua agcuggu gaa gggaccaaauc c   g
    ||  ||      ||||||    ||||   |||| ||||||| ||| ||||||||||| |   a
3'  ug  cg      cgccgu    uacg   cgau ucgacca uuu ccuugguuuag g   a
   u  gu  -----u      ----    aaa    u       u   a           c gag 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr18: 2052459-2052576 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000018025 ; Mib1-201; intron 12

Clustered miRNAs

< 10kb from rno-mir-133c

• rno-mir-133c: chr18: 2052459-2052576 [+]
• rno-mir-133a: chr18: 2052478-2052564 [-]
• rno-mir-3571: chr18: 2054922-2055032 [+]
• rno-mir-1: chr18: 2054933-2055019 [-]

Database links

• EntrezGene:Mir3582
• miRBase Tracker:MI0015456

Mature sequence rno-miR-133c

• Accession: MIMAT0017872
• Sequence: 34 - cagcugguugaaggggaccaa - 54
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-133c
  • miRDB:rno-miR-133c

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).