Stem-loop sequence rno-mir-3596b

AccessionMI0015455 (change log)
DescriptionRattus norvegicus miR-3596b stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention rno-mir-3596b
(3 sentences)

Stem-loop 
   -   -    a   -   c  c    c        aacuccuugugggc 
5'  ggc ccua gaa agg ag aggu guauaguu              a
    ||| |||| ||| ||| || |||| ||||||||               
3'  ccg ggau cuu ucc uc ucca cguaucaa              a
   c   a    c   c   a  a    a        aaucccgucucuaa
Get sequence
Deep sequencing
1 reads, 0 reads per million, 1 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr17: 16419981-16420075 [-]
antisense
ENSRNOT00000053717 ; Mirlet7d-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-3596b
rno-mir-3596bchr17: 16419981-16420075 [-]
rno-let-7dchr17: 16419980-16420077 [+]
rno-let-7f-1chr17: 16418221-16418309 [+]
rno-mir-3596dchr17: 16418217-16418313 [-]
rno-let-7a-1chr17: 16417853-16417946 [+]
Database links

Mature sequence rno-miR-3596b

Accession MIMAT0017871
Sequence

62 -  

aacuaugcaaccuacuaccu

 - 81

Get sequence
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).