Stem-loop sequence rno-mir-409b

Accession

MI0015454 (change log)

Previous IDs

rno-mir-3581

Description

Rattus norvegicus miR-409b stem-loop

Gene family

MIPF0000018; mir-154

Literature search

6 open access papers mention rno-mir-409b
(13 sentences)

Stem-loop

   u  a   -  aaa       ca         a  -    c 
5'  ug uac cg   agggguu  ccgagcaac uu cguc u
    || ||| ||   |||||||  ||||||||| || |||| c
3'  ac aug gc   ucuccaa  ggcucguug aa guag c
   -  c   a  cuc       ug         a  c    a 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133893418-133893497 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-409b

• rno-mir-3072: chr6: 133898795-133898905 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-3592: chr6: 133884161-133884276 [-]

Database links

• EntrezGene:Mir3581
• miRBase Tracker:MI0015454

Mature sequence rno-miR-409b

• Accession: MIMAT0017870
• Previous IDs: rno-miR-3581
• Sequence: 13 - agggguucaccgagcaacauucg - 35
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-409b
  • miRDB:rno-miR-409b

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).