Stem-loop sequence rno-mir-3570

Accession

MI0015438 (change log)

Description

Rattus norvegicus miR-3570 stem-loop

Stem-loop

   -    g  -aa     -------a   a   ggu   a      --    a  -    uuauu 
5'  agua au   ugguu        gcu uag   aca ucaacg  gucg ug guuu     u
    |||| ||   |||||        ||| |||   ||| ||||||  |||| || ||||     g
3'  ucgu ug   accga        cga guc   ugu aguugc  cagc ac caaa     a
   g    g  gag     guguccaa   a   acu   a      ga    c  u    ccuua 

Deep sequencing

27 reads, 0 reads per million, 24 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr13: 54952723-54952839 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3570

• rno-mir-181b-1: chr13: 54952903-54953012 [+]
• rno-mir-181a-1: chr13: 54952742-54952841 [+]
• rno-mir-3570: chr13: 54952723-54952839 [-]

Database links

• EntrezGene:Mir3570
• miRBase Tracker:MI0015438

Mature sequence rno-miR-3570

• Accession: MIMAT0017850
• Sequence: 23 - gguacaaucaacggucgauggu - 44
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3570
  • miRDB:rno-miR-3570

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).