Stem-loop sequence rno-mir-3559

Accession

MI0015421 (change log)

Description

Rattus norvegicus miR-3559 stem-loop

Literature search

5 open access papers mention rno-mir-3559
(16 sentences)

Stem-loop

   cucagaagaaagccuuuuu   u                         --gauc   g 
5'                    cuc cugcgugacagacuuaguacuacau      cau u
                      ||| |||||||||||||||||||||||||      |||  
3'                    gag gacgugcugucugagucaugaugua      gua u
   -agagaaaccuaaaaaaau   u                         aucaaa   a 

Deep sequencing

31987 reads, 10.2 reads per million, 480 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 75459241-75459355 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000003714 ; Zdhhc15-201; intron 10

Database links

• EntrezGene:Mir3559
• miRBase Tracker:MI0015421

Mature sequence rno-miR-3559-5p

• Accession: MIMAT0017827
• Sequence: 29 - ugacagacuuaguacuacauga - 50
• Deep sequencing: 24485 reads, 473 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3559-5p
  • miRDB:rno-miR-3559-5p

Mature sequence rno-miR-3559-3p

• Accession: MIMAT0017828
• Sequence: 69 - auguaguacugagucugucgug - 90
• Deep sequencing: 7499 reads, 427 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3559-3p
  • miRDB:rno-miR-3559-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).