Stem-loop sequence rno-mir-3074

Accession

MI0015411 (change log)

Description

Rattus norvegicus miR-3074 stem-loop

Gene family

MIPF0001103; mir-3074

Stem-loop

     uuu       --------a       -a    u  u        a    -gc    gugug 
5' gc   uugcuca         gggcucg  cucc gu ccugcuga cuga   cagu     a
   ||   |||||||         |||||||  |||| || |||||||| ||||   ||||     a
3' cg   gacgggu         ccugggc  gagg ca ggaugacu gacu   guca     a
     --u       cgacacuaa       gg    c  c        c    aua    agagu 

Deep sequencing

1671 reads, 0 reads per million, 305 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr17: 823940-824056 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-3074

• rno-mir-24-1: chr17: 823968-824035 [+]
• rno-mir-3074: chr17: 823940-824056 [-]
• rno-mir-27b: chr17: 823461-823557 [+]
• rno-mir-23b: chr17: 823222-823318 [+]

Database links

• EntrezGene:Mir3074
• miRBase Tracker:MI0015411

Mature sequence rno-miR-3074

• Accession: MIMAT0017815
• Sequence: 65 - gauaucagcucaguaggcaccg - 86
• Deep sequencing: 622 reads, 227 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3074
  • miRDB:rno-miR-3074

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).