Stem-loop sequence rno-mir-3549

AccessionMI0015405 (change log)
DescriptionRattus norvegicus miR-3549 stem-loop
Gene family MIPF0000082; mir-193
Stem-loop
   -   aaug  --   -cc       c   ga     a     ua   c  u   acug 
5'  gaa    cc  ggu   ugggagc gag  cuggg cuuug  ggc ag uga    a
    |||    ||  |||   ||||||| |||  ||||| |||||  ||| || |||     
3'  cuu    gg  ccg   gcccucg cuc  gaccc gaaac  ccg uc acu    c
   g   --ga  uu   ccu       a   uc     a     gc   u  u   ccca 
Get sequence
Deep sequencing
17 reads, 0 reads per million, 17 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 67065885-67065996 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-3549
rno-mir-193achr10: 67065896-67065981 [+]
rno-mir-3549chr10: 67065885-67065996 [-]
Database links

Mature sequence rno-miR-3549

Accession MIMAT0017807
Sequence

63 - 

aucuugcccgcaaagaccc

 - 81

Get sequence
Deep sequencing5 reads, 5 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).