Stem-loop sequence rno-mir-764

Accession

MI0012616 (change log)

Description

Rattus norvegicus miR-764 stem-loop

Gene family

MIPF0000707; mir-764

Literature search

3 open access papers mention rno-mir-764
(10 sentences)

Stem-loop

   u    ac     aa   uc  a     g   u   -   u           ccua 
5'  caac  aauca  auc  gg ggcag ugc cac aug ccuccuccaug    c
    ||||  |||||  |||  || ||||| ||| ||| ||| |||||||||||     
3'  guug  uuagu  uag  cc cuguc acg gug uac ggaggagguac    a
   g    cu     --   ua  a     a   -   a   c           auac 

Deep sequencing

9084 reads, 9.73 reads per million, 113 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 118123251-118123358 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-764

• rno-mir-3552: chrX: 118121374-118121478 [+]
• rno-mir-764: chrX: 118123251-118123358 [+]
• rno-mir-1912: chrX: 118130652-118130739 [+]

Database links

• EntrezGene:Mir764
• miRBase Tracker:MI0012616

Mature sequence rno-miR-764-5p

• Accession: MIMAT0012854
• Previous IDs: rno-miR-764
• Sequence: 27 - ggugcucacauguccuccucca - 48
• Deep sequencing: 638 reads, 73 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-764-5p
  • miRDB:rno-miR-764-5p
  • microrna.org:rno-miR-764-5p

Mature sequence rno-miR-764-3p

• Accession: MIMAT0017370
• Previous IDs: rno-miR-764*
• Sequence: 65 - gaggaggccauaguggcaacugu - 87
• Deep sequencing: 8444 reads, 110 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-764-3p
  • miRDB:rno-miR-764-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).