Stem-loop sequence rno-mir-465

Accession

MI0012612 (change log)

Description

Rattus norvegicus miR-465 stem-loop

Gene family

MIPF0000384; mir-465

Literature search

6 open access papers mention rno-mir-465
(13 sentences)

Stem-loop

   --u  ag   c          c  ug     gu   ga 
5'    gc  ugc cuauuuagaa gg  cuggu  gau  a
      ||  ||| |||||||||| ||  |||||  |||  u
3'    cg  aug gaugagucuu cc  gacua  uug  g
   auu  ga   a          u  gu     gu   aa 

Deep sequencing

484 reads, 5.88 reads per million, 34 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 151297367-151297443 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-465

• rno-mir-465: chrX: 151297367-151297443 [-]
• rno-mir-3580: chrX: 151295615-151295695 [-]
• rno-mir-871: chrX: 151287787-151287863 [-]

Database links

• EntrezGene:Mir465
• miRBase Tracker:MI0012612

Mature sequence rno-miR-465-5p

• Accession: MIMAT0012850
• Previous IDs: rno-miR-465
• Sequence: 11 - uauuuagaacggugcuggugug - 32
• Deep sequencing: 256 reads, 23 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-465-5p
  • miRDB:rno-miR-465-5p
  • microrna.org:rno-miR-465-5p

Mature sequence rno-miR-465-3p

• Accession: MIMAT0017367
• Previous IDs: rno-miR-465*
• Sequence: 45 - ugaucagugccuuucugaguag - 66
• Deep sequencing: 223 reads, 23 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-465-3p
  • miRDB:rno-miR-465-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).