Stem-loop sequence mmu-mir-664

Accession

MI0012531 (change log)

Symbol

MGI:Mir664

Description

Mus musculus miR-664 stem-loop

Gene family

MIPF0000300; mir-664

Literature search

7 open access papers mention mmu-mir-664
(27 sentences)

Stem-loop

   ----------cu         aaa   c         aa 
5'             ggcugggga   uga uggauagaa  c
               |||||||||   ||| |||||||||  a
3'             ccgaccccu   auu acuuaucuu  u
   gaaaguacacau         --c   u         au 

Deep sequencing

43439 reads, 43.1 reads per million, 102 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 185242975-185243043 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000104383 ; Snora36b-201; exon 1

  ENSMUST00000069652 ; Rab3gap2-201; intron 9

Database links

• EntrezGene:Mir664
• MGI:Mir664
• RNAcentral:URS0000759F98_10090
• miRBase Tracker:MI0012531

Mature sequence mmu-miR-664-5p

• Accession: MIMAT0017353
• Previous IDs: mmu-miR-664*
• Sequence: 1 - cuggcuggggaaaaugacugg - 21
• Deep sequencing: 38635 reads, 94 experiments
• Evidence: experimental; 454 [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000307DF8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-664-5p
  • miRDB:mmu-miR-664-5p

Mature sequence mmu-miR-664-3p

• Accession: MIMAT0012774
• Previous IDs: mmu-miR-664
• Sequence: 38 - uauucauuuacuccccagccua - 59
• Deep sequencing: 4797 reads, 96 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000036FA83_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-664-3p
  • miRDB:mmu-miR-664-3p
  • microrna.org:mmu-miR-664-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).