Stem-loop sequence mmu-mir-1947

Accession

MI0009937 (change log)

Symbol

MGI:Mir1947

Description

Mus musculus miR-1947 stem-loop

Literature search

2 open access papers mention mmu-mir-1947
(8 sentences)

Stem-loop

   --  aca   ug       ac         g      -gc  a 
5'   ga   agg  guggagg  gagcuagcu agugcu   ag c
     ||   |||  |||||||  ||||||||| ||||||   || a
3'   cu   ucc  uaccucc  cucgaucga ucacga   uc c
   aa  -cg   cg       cu         g      gaa  u 

Deep sequencing

3499 reads, 0 reads per million, 87 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr16: 33105361-33105445 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000066593 ; Lmln-001; intron 13

  ENSMUST00000023497 ; Lmln-001; intron 13

  antisense

  OTTMUST00000094178 ; RP24-422I18.4-001; intron 1

  ENSMUST00000105610 ; Gm17106-001; intron 1

Database links

• EntrezGene:Mir1947
• MGI:Mir1947
• RNAcentral:URS000075DEFB_10090
• miRBase Tracker:MI0009937

Mature sequence mmu-miR-1947-5p

• Accession: MIMAT0009413
• Previous IDs: mmu-miR-1947
• Sequence: 15 - aggacgagcuagcugagugcug - 36
• Deep sequencing: 3490 reads, 87 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS0000514AEA_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1947-5p
  • miRDB:mmu-miR-1947-5p
  • microrna.org:mmu-miR-1947-5p

Mature sequence mmu-miR-1947-3p

• Accession: MIMAT0017343
• Previous IDs: mmu-miR-1947*
• Sequence: 51 - gcacugagcuagcucucccucc - 72
• Deep sequencing: 4 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mmu-miR-1947-3p
  • miRDB:mmu-miR-1947-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).