Stem-loop sequence rno-mir-471

AccessionMI0006150 (change log)
DescriptionRattus norvegicus miR-471 stem-loop
Gene family MIPF0000423; mir-471
Literature search

1 open access papers mention rno-mir-471
(1 sentences)

Stem-loop 
   --   ag g  u          a ug        a  ac 
5'   agc  u cu uacguaguau g  cuuuucac uu  a
     |||  | || |||||||||| |  |||||||| ||   
3'   ucg  a ga auguaucaua c  ggaaagug aa  c
   au   ga g  c          c gu        a  aa
Get sequence
Deep sequencing
2813 reads, 100 reads per million, 58 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chrX: 151272104-151272181 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-471
rno-mir-880chrX: 151281988-151282065 [-]
rno-mir-463chrX: 151276029-151276106 [-]
rno-mir-741chrX: 151274356-151274451 [-]
rno-mir-3551chrX: 151272824-151272905 [-]
rno-mir-471chrX: 151272104-151272181 [-]
Database links

Mature sequence rno-miR-471-5p

Accession MIMAT0005318
Previous IDsrno-miR-471
Sequence

11 -  

uacguaguauagugcuuuucac

 - 32

Get sequence
Deep sequencing1392 reads, 44 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-471-3p

Accession MIMAT0017310
Previous IDsrno-miR-471*
Sequence

46 -  

ugaaaggugccauacuaugu

 - 65

Get sequence
Deep sequencing1420 reads, 47 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).