Stem-loop sequence rno-mir-301b

AccessionMI0006137 (change log)
DescriptionRattus norvegicus miR-301b stem-loop
Gene family MIPF0000034; mir-130
Literature search

12 open access papers mention rno-mir-301b
(27 sentences)

Stem-loop 
   --gcug        c    uagguugc    c  ug    g 
5'       cgggugcu ugac        acua ug  cugu g
         |||||||| ||||        |||| ||  |||| a
3'       gucuacga acug        uggu ac  gacg a
   accagg        a    -----uua    a  gu    a
Get sequence
Deep sequencing
269479 reads, 229 reads per million, 500 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr11: 88129426-88129503 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-301b
rno-mir-301bchr11: 88129426-88129503 [+]
rno-mir-130bchr11: 88129773-88129854 [+]
Database links

Mature sequence rno-miR-301b-5p

Accession MIMAT0017300
Previous IDsrno-miR-301b*
Sequence

10 -  

gcucugacuagguugcacuacu

 - 31

Get sequence
Deep sequencing11 reads, 11 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-301b-3p

Accession MIMAT0005304
Previous IDsrno-miR-301b
Sequence

45 -  

cagugcaaugguauugucaaagc

 - 67

Get sequence
Deep sequencing269344 reads, 500 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).