Stem-loop sequence rno-mir-17-2

Accession

MI0006131 (change log)

Description

Rattus norvegicus miR-17-2 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

72 open access papers mention rno-mir-17-2
(563 sentences)

Stem-loop

   -u   cc    -ca        a        g   cu  u 
5'   ugg  augu   aagugcuu cagugcag uag  uc u
     |||  ||||   |||||||| |||||||| |||  ||  
3'   acc  uaca   uucacgaa gucacguc auc  ag g
   gu   au    uuc        c        -   -u  a 

Deep sequencing

96856 reads, 38.6 reads per million, 492 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 140117891-140117968 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-17-2

• rno-mir-17-2: chrX: 140117891-140117968 [-]
• rno-mir-20b: chrX: 140117518-140117589 [-]
• rno-mir-19b-2: chrX: 140117379-140117474 [-]
• rno-mir-92a-2: chrX: 140117249-140117340 [-]
• rno-mir-363: chrX: 140117098-140117184 [-]

Database links

• EntrezGene:Mir17-2
• miRBase Tracker:MI0006131

Mature sequence rno-miR-17-5p

• Accession: MIMAT0000786
• Previous IDs: rno-miR-17
• Sequence: 11 - caaagugcuuacagugcagguag - 33
• Deep sequencing: 192321 reads, 492 experiments
• Evidence: experimental; cloned [1-2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-17-5p
  • miRDB:rno-miR-17-5p
  • microrna.org:rno-miR-17-5p

Mature sequence rno-miR-17-2-3p

• Accession: MIMAT0017295
• Sequence: 47 - acugcacugcaagcacuucuuac - 69
• Deep sequencing: 648 reads, 192 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-17-2-3p
  • miRDB:rno-miR-17-2-3p

References

1. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).