Stem-loop sequence mmu-mir-504

Accession

MI0005515 (change log)

Symbol

MGI:Mir504

Description

Mus musculus miR-504 stem-loop

Gene family

MIPF0000437; mir-504

Literature search

20 open access papers mention mmu-mir-504
(169 sentences)

Stem-loop

   -uc    -            g     a    -a  u   a 
5'    cugu ugggagacccug ucugc cucu  uc gua a
      |||| |||||||||||| ||||| ||||  || |||  
3'    gaca acccuuugggac ggacg gagg  ag cau c
   gga    u            g     a    ga  u   u 

Deep sequencing

3182 reads, 2.82 reads per million, 71 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 59097658-59097736 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000044387 ; Fgf13-001; intron 3

  OTTMUST00000044388 ; Fgf13-002; intron 3

  OTTMUST00000044394 ; Fgf13-008; intron 3

  OTTMUST00000044392 ; Fgf13-006; intron 4

  ENSMUST00000033473 ; Fgf13-001; intron 3

  ENSMUST00000119306 ; Fgf13-008; intron 3

  ENSMUST00000138503 ; Fgf13-002; intron 3

  ENSMUST00000119833 ; Fgf13-006; intron 4

Database links

• EntrezGene:Mir504
• MGI:Mir504
• RNAcentral:URS000075B544_10090
• miRBase Tracker:MI0005515

Mature sequence mmu-miR-504-5p

• Accession: MIMAT0004889
• Previous IDs: mmu-miR-504
• Sequence: 11 - agacccuggucugcacucuauc - 32
• Deep sequencing: 3055 reads, 68 experiments
• Evidence: experimental; Illumina [2-3]
• Database links:
  • RNAcentral:URS00005CC20C_10090
• Predicted targets:
  • miRDB:mmu-miR-504-5p
  • microrna.org:mmu-miR-504-5p

Mature sequence mmu-miR-504-3p

• Accession: MIMAT0017277
• Previous IDs: mmu-miR-504*
• Sequence: 47 - agggagagcagggcaggguuuc - 68
• Deep sequencing: 121 reads, 32 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000017AA47_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-504-3p
  • miRDB:mmu-miR-504-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).