Stem-loop sequence mmu-mir-874

Accession

MI0005479 (change log)

Symbol

MGI:Mir874

Description

Mus musculus miR-874 stem-loop

Gene family

MIPF0000401; mir-874

Literature search

14 open access papers mention mmu-mir-874
(36 sentences)

Stem-loop

   --      cug   c   a  ca        a ag  a 
5'   uuagcc   cgg ccc cg  ccagggua g  ag c
     ||||||   ||| ||| ||  |||||||| |  || u
3'   ggucgg   gcc ggg gc  ggucccgu c  uc c
   cg      uca   a   a  cc        - cu  a 

Deep sequencing

5307 reads, 7.89 reads per million, 76 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 58023125-58023200 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000087800 ; Klhl3-001; intron 8

  ENSMUST00000160860 ; Klhl3-001; intron 8

  ENSMUST00000091583 ; Klhl3-201; intron 10

Database links

• EntrezGene:Mir874
• MGI:Mir874
• RNAcentral:URS00006EB0F5_10090
• miRBase Tracker:MI0005479

Mature sequence mmu-miR-874-5p

• Accession: MIMAT0017268
• Previous IDs: mmu-miR-874*
• Sequence: 10 - cggccccacgcaccaggguaag - 31
• Deep sequencing: 504 reads, 48 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000B19DE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-874-5p
  • miRDB:mmu-miR-874-5p

Mature sequence mmu-miR-874-3p

• Accession: MIMAT0004853
• Previous IDs: mmu-miR-874
• Sequence: 45 - cugcccuggcccgagggaccga - 66
• Deep sequencing: 4798 reads, 74 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00005609ED_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-874-3p
  • miRDB:mmu-miR-874-3p
  • microrna.org:mmu-miR-874-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).