Stem-loop sequence mmu-mir-496a

Accession

MI0004589 (change log)

Previous IDs

mmu-mir-496

Symbol

MGI:Mir496a

Description

Mus musculus miR-496 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

6 open access papers mention mmu-mir-496a
(12 sentences)

Stem-loop

        u    u        c     gu         uua 
5' agugu cgaa ggagguug ccaug  guguucauu   u
   ||||| |||| |||||||| |||||  |||||||||    
3' ucacg gcuu ccucuaac gguac  uaugaguag   u
        -    u        c     au         uau 

Deep sequencing

11080 reads, 112 reads per million, 66 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109739119-109739197 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000113369 ; Mirg-006; intron 1

  OTTMUST00000113370 ; Mirg-002; intron 1

  OTTMUST00000113366 ; Mirg-004; intron 2

  OTTMUST00000113367 ; Mirg-001; intron 2

  OTTMUST00000113368 ; Mirg-005; intron 2

  OTTMUST00000114051 ; Mirg-010; intron 7

  OTTMUST00000114052 ; Mirg-009; intron 8

  OTTMUST00000114049 ; Mirg-011; intron 11

  ENSMUST00000182231 ; Mirg-006; intron 1

  ENSMUST00000181496 ; Mirg-002; intron 1

  ENSMUST00000182268 ; Mirg-004; intron 2

  ENSMUST00000181543 ; Mirg-001; intron 2

  ENSMUST00000183116 ; Mirg-005; intron 2

  ENSMUST00000182185 ; Mirg-010; intron 7

  ENSMUST00000182499 ; Mirg-009; intron 8

  ENSMUST00000183144 ; Mirg-011; intron 11

Clustered miRNAs

< 10kb from mmu-mir-496a

• mmu-mir-544: chr12: 109729325-109729402 [+]
• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]
• mmu-mir-3072: chr12: 109747878-109747960 [+]

Database links

• EntrezGene:Mir496
• MGI:Mir496a
• RNAcentral:URS000066E3E2_10090
• miRBase Tracker:MI0004589

Mature sequence mmu-miR-496a-5p

• Accession: MIMAT0017244
• Previous IDs: mmu-miR-496*;mmu-miR-496-5p
• Sequence: 14 - agguugcccaugguguguuca - 34
• Deep sequencing: 58 reads, 24 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000CE959_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-496a-5p
  • miRDB:mmu-miR-496a-5p

Mature sequence mmu-miR-496a-3p

• Accession: MIMAT0003738
• Previous IDs: mmu-miR-496;mmu-miR-496-3p
• Sequence: 47 - ugaguauuacauggccaaucuc - 68
• Deep sequencing: 11022 reads, 65 experiments
• Evidence: experimental; MPSS [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000003BF62_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-496a-3p.1
  • miRDB:mmu-miR-496a-3p
  • microrna.org:mmu-miR-496a-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).