Stem-loop sequence rno-mir-497

AccessionMI0003724 (change log)
DescriptionRattus norvegicus miR-497 stem-loop
Gene family MIPF0000231; mir-497
Literature search

20 open access papers mention rno-mir-497
(158 sentences)

   -------cc    g    c         u  --   ac 
5'          agca caca ugugguuug ac  ggc  u
            |||| |||| ||||||||| ||  |||   
3'          uugu gugu acaccaaac ug  ccg  g
   ggagcgaga    g    c         c  ca   gu 
Get sequence
Deep sequencing
441462 reads, 333 reads per million, 491 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 56844977-56845045 [+]
Clustered miRNAs
< 10kb from rno-mir-497
rno-mir-497chr10: 56844977-56845045 [+]
rno-mir-195chr10: 56845301-56845387 [+]
Database links

Mature sequence rno-miR-497-5p

Accession MIMAT0003383
Previous IDsrno-miR-497

2 - 


 - 23

Get sequence
Deep sequencing440185 reads, 491 experiments
Evidence experimental; cloned [1-2], Northern [1], SOLiD [3]
Predicted targets

Mature sequence rno-miR-497-3p

Accession MIMAT0017230
Previous IDsrno-miR-497*

41 - 


 - 63

Get sequence
Deep sequencing1120 reads, 235 experiments
Evidence experimental; SOLiD [3]
Predicted targets


PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).