Stem-loop sequence rno-mir-497

Accession

MI0003724 (change log)

Description

Rattus norvegicus miR-497 stem-loop

Gene family

MIPF0000231; mir-497

Literature search

20 open access papers mention rno-mir-497
(158 sentences)

Stem-loop

   -------cc    g    c         u  --   ac 
5'          agca caca ugugguuug ac  ggc  u
            |||| |||| ||||||||| ||  |||   
3'          uugu gugu acaccaaac ug  ccg  g
   ggagcgaga    g    c         c  ca   gu 

Deep sequencing

441462 reads, 333 reads per million, 491 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 56844977-56845045 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-497

• rno-mir-497: chr10: 56844977-56845045 [+]
• rno-mir-195: chr10: 56845301-56845387 [+]

Database links

• EntrezGene:Mir497
• miRBase Tracker:MI0003724

Mature sequence rno-miR-497-5p

• Accession: MIMAT0003383
• Previous IDs: rno-miR-497
• Sequence: 2 - cagcagcacacugugguuugua - 23
• Deep sequencing: 440185 reads, 491 experiments
• Evidence: experimental; cloned [1-2], Northern [1], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-497-5p
  • miRDB:rno-miR-497-5p
  • microrna.org:rno-miR-497-5p

Mature sequence rno-miR-497-3p

• Accession: MIMAT0017230
• Previous IDs: rno-miR-497*
• Sequence: 41 - ccaaaccacacugugguguuaga - 63
• Deep sequencing: 1120 reads, 235 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-497-3p
  • miRDB:rno-miR-497-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).