Stem-loop sequence rno-mir-493

AccessionMI0003540 (change log)
DescriptionRattus norvegicus miR-493 stem-loop
Gene family MIPF0000230; mir-493
Literature search

7 open access papers mention rno-mir-493
(11 sentences)

Stem-loop 
      cuc        u                    cau   u 
5' ggc   cagggccu guacaugguaggcuuucauu   ugu u
   |||   |||||||| ||||||||||||||||||||   |||  
3' ccg   gucccgga cgugugucaucuggaagugg   aca g
      --u        c                    cuu   c
Get sequence
Deep sequencing
13100 reads, 2.36 reads per million, 296 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 133699509-133699592 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-493
rno-mir-673chr6: 133691381-133691463 [+]
rno-mir-493chr6: 133699509-133699592 [+]
rno-mir-337chr6: 133705920-133706016 [+]
rno-mir-3544chr6: 133705932-133706019 [-]
rno-mir-540chr6: 133706202-133706285 [+]
rno-mir-665chr6: 133706457-133706550 [+]
Database links

Mature sequence rno-miR-493-5p

Accession MIMAT0017217
Previous IDsrno-miR-493*
Sequence

14 -  

uuguacaugguaggcuuucauu

 - 35

Get sequence
Deep sequencing7692 reads, 256 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-493-3p

Accession MIMAT0003191
Previous IDsrno-miR-493
Sequence

54 -  

ugaaggucuacugugugccag

 - 74

Get sequence
Deep sequencing5397 reads, 259 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).