Stem-loop sequence rno-mir-412

Accession

MI0003488 (change log)

Description

Rattus norvegicus miR-412 stem-loop

Gene family

MIPF0000192; mir-412

Literature search

2 open access papers mention rno-mir-412
(3 sentences)

Stem-loop

   -gg     a    c      c   aa    -    u 
5'    gacgg uggu gaccag ugg  agua auug u
      ||||| |||| |||||| |||  |||| ||||  
3'    cugcc auca cugguc acu  ucau uaau u
   ugg     g    c      c   --    g    c 

Deep sequencing

6194 reads, 0 reads per million, 226 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133893571-133893640 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000053613 ; Mir412-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-412

• rno-mir-3592: chr6: 133884161-133884276 [-]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]
• rno-mir-3072: chr6: 133898795-133898905 [+]

Database links

• EntrezGene:Mir412
• miRBase Tracker:MI0003488

Mature sequence rno-miR-412-5p

• Accession: MIMAT0017204
• Previous IDs: rno-miR-412*
• Sequence: 9 - uggucgaccagcuggaaagu - 28
• Deep sequencing: 5301 reads, 207 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-412-5p
  • miRDB:rno-miR-412-5p

Mature sequence rno-miR-412-3p

• Accession: MIMAT0003124
• Previous IDs: rno-miR-412
• Sequence: 45 - cuucaccugguccacuagccgu - 66
• Deep sequencing: 890 reads, 149 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-412-3p
  • miRDB:rno-miR-412-3p
  • microrna.org:rno-miR-412-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).