Stem-loop sequence rno-mir-489

AccessionMI0003477 (change log)
DescriptionRattus norvegicus miR-489 stem-loop
Gene family MIPF0000111; mir-489
Literature search

5 open access papers mention rno-mir-489
(17 sentences)

Stem-loop 
   ----acugcuaca       c              c      aca      c ug 
5'              guggcag uugguugucguaug gugaug   cguucu g  u
                ||||||| |||||||||||||| ||||||   |||||| |   
3'              cauuguc aaucgacgguauau cacuac   guaaga c  a
   ugaacaacaagga       a              a      --a      c uu
Get sequence
Deep sequencing
8208 reads, 0.386 reads per million, 259 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr4: 28659523-28659628 [-]
sense
ENSRNOT00000013910 ; Calcr-201; intron 4
ENSRNOT00000013937 ; Calcr-202; intron 4
Clustered miRNAs
< 10kb from rno-mir-489
rno-mir-489chr4: 28659523-28659628 [-]
rno-mir-653chr4: 28658882-28658978 [-]
Database links

Mature sequence rno-miR-489-5p

Accession MIMAT0017196
Previous IDsrno-miR-489*
Sequence

23 -  

ugucguaugcgugaugacacguuc

 - 46

Get sequence
Deep sequencing350 reads, 99 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-489-3p

Accession MIMAT0003113
Previous IDsrno-miR-489
Sequence

61 -  

augacaucacauauauggcagc

 - 82

Get sequence
Deep sequencing7857 reads, 254 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).