Stem-loop sequence rno-mir-150

Accession

MI0000920 (change log)

Description

Rattus norvegicus miR-150 stem-loop

Gene family

MIPF0000197; mir-150

Literature search

34 open access papers mention rno-mir-150
(150 sentences)

Stem-loop

   c        g            ac   u       u -   u 
5'  uucucaag cccugucuccca  ccu guaccag g cug g
    |||||||| ||||||||||||  ||| ||||||| | ||| c
3'  agggguuc gggacagggggu  gga caugguc c gac c
   c        a            cc   -       c a   u 

Deep sequencing

661299 reads, 414 reads per million, 490 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 101115974-101116058 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir150
• miRBase Tracker:MI0000920

Mature sequence rno-miR-150-5p

• Accession: MIMAT0000853
• Previous IDs: rno-miR-150
• Sequence: 16 - ucucccaacccuuguaccagug - 37
• Deep sequencing: 659094 reads, 490 experiments
• Evidence: experimental; cloned [1-3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-150-5p
  • miRDB:rno-miR-150-5p
  • microrna.org:rno-miR-150-5p

Mature sequence rno-miR-150-3p

• Accession: MIMAT0017133
• Previous IDs: rno-miR-150*
• Sequence: 52 - cugguacaggccuggggga - 70
• Deep sequencing: 2191 reads, 343 experiments
• Evidence: experimental; SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-150-3p
  • miRDB:rno-miR-150-3p

References

1. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).